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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs7427492 chr3:134261654 CEP63 chr3:134204575-134293852:+ 0.4 5.81 8.19E-8 Height
THYM cis rs10935120 1 rs7428326 chr3:134251184 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs7428326 chr3:134251184 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs6911965 1 rs74293240 chr6:24483896 ALDH5A1 chr6:24495197-24537434:+ 0.33 4.16 7.04E-5 Hematological and biochemical traits
THYM cis rs6911965 1 rs74293240 chr6:24483896 GPLD1 chr6:24428405-24489850:- 0.56 5.51 3.04E-7 Hematological and biochemical traits
THYM cis rs10935120 1 rs7429866 chr3:134236306 ANAPC13 chr3:134196547-134204865:- -0.59 -8.13 1.58E-12 Height
THYM cis rs10935120 1 rs7429866 chr3:134236306 CEP63 chr3:134204575-134293852:+ -0.41 -5.87 6.33E-8 Height
THYM cis rs10935120 1 rs7432268 chr3:134242051 ANAPC13 chr3:134196547-134204865:- 0.58 8.05 2.33E-12 Height
THYM cis rs10935120 1 rs7432268 chr3:134242051 CEP63 chr3:134204575-134293852:+ 0.4 5.81 8.19E-8 Height
THYM cis rs10935120 1 rs7433663 chr3:134235790 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs7433663 chr3:134235790 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs7433991 chr3:134312292 ANAPC13 chr3:134196547-134204865:- 0.55 7.48 3.7E-11 Height
THYM cis rs10935120 1 rs7433991 chr3:134312292 CEP63 chr3:134204575-134293852:+ 0.43 6.36 7.09E-9 Height
THYM cis rs2273 1 rs7436021 chr4:76905472 NAAA chr4:76831809-76862166:- -0.46 -4.92 3.56E-6 Longevity
THYM cis rs73726531 1 rs74370978 chr6:18114687 NHLRC1 chr6:18120718-18122851:- -1.06 -4.36 3.24E-5 Thiopurine S-methyltransferase activity